Package index
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MetAlyzer_dataset() - Open file and read data
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aggregated_data() - Get Aggregated Data
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calculate_conditional_mean() - Helper function to calculate conditional mean based on significance
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calculate_node_aggregates_conditional() - Calculate Node-Level Aggregate Statistics (Conditional on Significance)
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create_viridis_style() - Creates a viridis color style for Plotly plots.
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example_mutation_data_xl() - Get example mutation data
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export_conc_values() - Export filtered raw data as csv
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filter_meta_data() - Filter meta data
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filter_metabolites() - Filter metabolites
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load_demodata_biocrates() - Get demodata from biocrates
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load_rawdata_extraction() - Get example extraction data
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log2FC() - Get log2FC Data
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metalyzer_colors() - Get MetAlyzer colors
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pathway() - Get pathway file path
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plot_network() - Plot Pathway Network
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plot_scatter() - Scatter Plot Visualization
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polarity() - Get polarity file path
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read_edges() - Read and Validate Network Edges (Connections)
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read_named_region() - Read Named Regions
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read_nodes() - Read and Validate Network Nodes (Metabolites)
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read_pathways() - Read and Validate Pathway Annotations
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read_webidq() - Open file and read data
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rename_meta_data() - Rename meta data
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save_plot() - Save plots
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start_app() - Launch the Shiny App
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summarize_conc_values() - Summarize concentration values
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summarize_quant_data() - Summarize quantification status
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toy_diffres() - Get example log2fc data
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update_meta_data() - Update meta data