This function returns the tibble "aggregated_data".
Examples
metalyzer_se <- MetAlyzer::read_webidq(file_path = MetAlyzer::load_demodata_biocrates())
#> Input checks passed. Proceeding with reading webidq file.
#>
#>
#> _____ ______ _______ _________ ________ ___ ___ ___ ________ _______ ________
#> |\ _ \ _ \|\ ___ \|\___ ___\\ __ \|\ \ |\ \ / /|\_____ \|\ ___ \ |\ __ \
#> \ \ \\\__\ \ \ \ __/\|___ \ \_\ \ \|\ \ \ \ \ \ \/ / /\|___/ /\ \ __/|\ \ \|\ \
#> \ \ \\|__| \ \ \ \_|/__ \ \ \ \ \ __ \ \ \ \ \ / / / / /\ \ \_|/_\ \ _ _\
#> \ \ \ \ \ \ \ \_|\ \ \ \ \ \ \ \ \ \ \ \____ \/ / / / /_/__\ \ \_|\ \ \ \\ \|
#> \ \__\ \ \__\ \_______\ \ \__\ \ \__\ \__\ \_______\__/ / / |\________\ \_______\ \__\\ _\
#> \|__| \|__|\|_______| \|__| \|__|\|__|\|_______|\____/ / \|_______|\|_______|\|__|\|__|
#> \|____|/
#>
#>
#> Info: Reading color code "FFCBD2D7" as "#CBD2D7"
#> Info: Reading color code "FFB9DE83" as "#B9DE83"
#> Info: Reading color code "FFB9DE83" as "#B9DE83"
#> Info: Reading color code "FFA28BA3" as "#A28BA3"
#> Info: Reading color code "FFA28BA3" as "#A28BA3"
#> Info: Reading color code "FFB2D1DC" as "#B2D1DC"
#> Info: Reading color code "FF7FB2C5" as "#7FB2C5"
#> Info: Reading color code "FFB2D1DC" as "#B2D1DC"
#> Info: Reading color code "FF7FB2C5" as "#7FB2C5"
#>
#> Measured concentration values:
#> ------------------------------
#> 0% 25% 50% 75% 100%
#> 0.000000 0.286299 1.289381 6.308854 12522.000000
#>
#> NAs: 762 (3.74%)
#>
#>
#> Measured quantification status:
#> -------------------------------
#> Valid: 15419 (75.66%)
#> LOQ: 983 (4.82%)
#> LOD: 3978 (19.52%)
#> NAs: 0 (0%)
#>
MetAlyzer::aggregated_data(metalyzer_se)
#> # A tibble: 20,380 × 5
#> # Groups: Metabolite [1,019]
#> ID Metabolite Class Concentration Status
#> <fct> <fct> <fct> <dbl> <fct>
#> 1 14 C0 Acylcarnitines 16.4 Valid
#> 2 15 C0 Acylcarnitines 15 Valid
#> 3 16 C0 Acylcarnitines 14.9 Valid
#> 4 17 C0 Acylcarnitines 16.4 Valid
#> 5 18 C0 Acylcarnitines 16.2 Valid
#> 6 19 C0 Acylcarnitines 15.9 Valid
#> 7 20 C0 Acylcarnitines 15.3 Valid
#> 8 21 C0 Acylcarnitines 16.2 Valid
#> 9 22 C0 Acylcarnitines 15.2 Valid
#> 10 23 C0 Acylcarnitines 16.3 Valid
#> # ℹ 20,370 more rows