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Plot Log Ratio of PP/FP (Phosphoproteome to Full Proteome) intensities

Source: R/normalization_correction.R
plotLogRatio.Rd

plotLogRatio generates a boxplot of the log2 ratio of intensities of phosphoproteome to full proteome data from a MultiAssayExperiment object.

Usage

plotLogRatio(maeData, normalization = FALSE)

Arguments

maeData

A MultiAssayExperiment object containing phosphoproteome and full proteome data.

normalization

A logical value indicating whether to perform normalization. Default is FALSE.

Value

A ggplot2 object representing the boxplot of the log2 ratios.

Examples

# Load multiAssayExperiment object
data("dia_example")
# Call the function
plotLogRatio(dia_example, normalization = TRUE)