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Generate Input Table for DIA Analysis

Source: R/dataImport.R
generateInputTable_DIA.Rd

generateInputTable_DIA generates an input table for DIA analysis by reading files from a specified folder.

Usage

generateInputTable_DIA(rawFolder)

Arguments

rawFolder

A character string specifying the path to the folder containing the raw files.

Value

A data.frame with columns fileName, searchType, and id that can be used as input for further analysis.

Details

The function performs the following steps:

  • Reads the summary file containing experimental information.

  • Generates unique experimental IDs based on sample type, treatment, timepoint, and replicate.

  • Processes file paths for full proteome and phosphoproteome data.

  • Creates a combined input table with file names, search types, and IDs.