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Check the PP/FP ratio matrix and remove feature that do not meet requirements

Source: R/normalization_correction.R
checkRatioMat.Rd

checkRatioMat checks the ratio matrix for samples that do not have sufficient overlap of phospho-peptides between enriched (PP) and unenriched (FP) samples.

Usage

checkRatioMat(ratioMat, minOverlap = 3)

Arguments

ratioMat

A numeric matrix representing the ratio of phosphoproteome data to full proteome data.

minOverlap

A numeric specifying the minimum number of overlapping peptides required between samples. Default is 3.

Value

A character vector of sample names that do not meet the overlap criteria.